TSSr: an R/Bioconductor package for analysis of transcription start sites
TSSr is an R package that provides rich functions for mapping transcription start sites (TSSs) and characterizations of structures and activities of core promoters based on various types of sequencing data, such as cap analysis of gene expression (CAGE), nAnT-iCAGE, NanoCAGE, transcript leader sequencing (TL-seq), transcript isoform sequencing (TIF-seq), TSS-seq, RAMPAGE, single-cell tagged reverse transcription (STRT), global nuclear run-on cap (GRO-cap), and STRIPE-seq.
